The bioinformatics scientist within the public health laboratory will be in charge of analysis of NGS data produced by the Center. The incumbent is expected to apply state-of-the-art computational methods and assist in the development of innovative approaches to software challenges that touch all aspects of NGS data analysis. This includes, but is not limited to: pathogen identification, outbreak tracking, mapping drug-resistance determinants, development of novel genetic tests, variant analysis, genome annotation and phylogenetics. The analysis may involve microbial, viral, fungal, parasites and human NGS data. In addition, he/she may be expected to serve as the statistics resource for the Center’s research and regulatory programs. Coding expertise, efficient communication skills, basic knowledge of microbiology, training and outreach are necessary requirements for this position.
Laboratory Infrastructure RequirementsIdentify and implement tools to evaluate overall quality score of the sequencing reads, presence of adaptors, carry-over and contamination.
Demonstrate knowledge of and utilize current best-practice tools for genome assembly, quality control, containerization and workflow management.
Bachelor’s degree with 2 or more years of experience OR Master’s degree.
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Required Skills/Expected TasksCan develop complex bioinformatics solutions with no or limited supervisions. Can handle multiple projects at any given time. Will act as a resource for guidance during the design, development and testing phase of projects. Can work independently or be an integral part of a research team. Will participate in the production of high quality scientific communication and grant proposals. Can train and lead lower level bioinformatics staffs.
QualificationsMaster’s degree with 2 or more years of experience OR PhD.